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Prepare Linux environments, migrate software to HPC, build and run Singularity containers, and organize research code for reproducible execution.

Suggested progression

Intermediate Linux
Knowledge of Linux is indispensable for using advanced CI. While GUIs are becoming more prevalent,…
Open material
Code Migration (COMPLECS)
We will cover typical approaches to moving your computations to HPC resources – use of applic…
Open material
Singularity Containers
Singularity is a container platform that allows you, as an HPC user, to pack the applications and l…
Open material
Architecting Reproducible Science: A Practical Path Beyond the Notebook
Jupyter Notebooks are, for the most part, useful for fast experimentation. However, poor programmin…
Open material

Designed for

Researchers bringing existing scientific software and notebooks to HPC

Before you begin

Basic Linux commands and some experience with research code or Python notebooks.

Estimated scope

4 guided steps